Sponsor: Sarcoma Alliance for Research through Collaboration (other)
Phase: 2
Start date: Aug. 1, 2024
Planned enrollment: 40
Bezuclastinib (CGT9486; formerly PLX9486) is an oral, selective tyrosine kinase inhibitor in development for KIT-driven diseases, including systemic mastocytosis (SM) and gastrointestinal stromal tumor (GIST). Human trials have reported clinical activity in both advanced and non-advanced SM, and in combination with sunitinib for second-line GIST. (ashpublications.org, jacionline.org, pubmed.ncbi.nlm.nih.gov)
Systemic mastocytosis (advanced)
Systemic mastocytosis (non-advanced)
Gastrointestinal stromal tumor (GIST)
Across SM and GIST studies to date, bezuclastinib has generally been well tolerated. Common treatment-related events include hair color changes, transaminase elevations, edema, dysgeusia, and cytopenias (neutropenia, thrombocytopenia), mostly low grade and reversible; dose reductions/discontinuations for liver enzyme elevations occurred infrequently. Notably, no treatment-related cognitive impairment or intracranial bleeding events have been reported in APEX or SUMMIT updates. In PEAK Part 1, most TEAEs were low grade with limited dose reductions. (ashpublications.org, jacionline.org, investors.cogentbio.com, ascopubs.org)
Notes - Additional pivotal readouts are anticipated in 2H 2025 from APEX (AdvSM) and PEAK (GIST). Until full peer-reviewed publications are available for these trials, efficacy and safety details should be interpreted in the context of abstracts and sponsor disclosures. (investors.cogentbio.com)
Last updated: Sep 2025
Goal: Evaluate the antitumor activity and safety of adding bezuclastinib to sunitinib in patients with GIST who have progressed on prior sunitinib monotherapy, and explore resistance mechanisms via tumor and ctDNA profiling.
Patients: Adults with inoperable or metastatic GIST harboring a primary KIT exon 11 or exon 9 mutation (select other primary KIT mutations allowed case-by-case), ECOG 0–2, who previously progressed on or were intolerant to imatinib and have documented progression on sunitinib (≥25 mg daily continuous or 37.5 mg 4/2 schedule). Measurable disease by mRECIST v1.1 and adequate organ function required. Key exclusions include prior bezuclastinib, unacceptable toxicity to sunitinib at 25 mg daily, non-KIT–driven GIST (e.g., PDGFRA, SDHx, NF1, BRAF), significant cardiac disease, strong CYP3A4 inhibitor/inducer need, and uncontrolled comorbidities. Treated, stable CNS metastases permitted.
Design: Open-label, single-arm, phase 2 study with a planned enrollment of 40. Following a washout, patients start bezuclastinib and add sunitinib two weeks later. Treatment continues until progression, unacceptable toxicity, or withdrawal; treatment beyond progression is allowed if there is clinical benefit. Imaging by CT/MRI every 8 weeks through 15 months, then every 3 months. Correlative studies include serial ctDNA; in a 20-patient subset, PET/CT at prespecified timepoints and a cycle 2 day 1 biopsy.
Treatments: Bezuclastinib 600 mg orally once daily combined with sunitinib 37.5 mg orally once daily in 28-day cycles, with bezuclastinib lead-in for two weeks before sunitinib initiation. Bezuclastinib (CGT9486) is a selective KIT tyrosine kinase inhibitor with potent activity against activation-loop mutations and activity across primary and secondary KIT mutations relevant to GIST; it was engineered for kinase selectivity and minimal CNS penetration. Early GIST studies of bezuclastinib plus sunitinib reported a median PFS of about 12 months in refractory cohorts and supported the chosen phase 3 combination dose; safety has been manageable with predominantly low-grade adverse events. Sunitinib is a standard multi-targeted TKI used in GIST after imatinib, inhibiting KIT and VEGFR among other kinases.
Outcomes: Primary: Median progression-free survival by mRECIST v1.1 using Kaplan–Meier methods (from first dose to progression or death, up to 2 years). Secondary: KIT mutation profiling in tumor and ctDNA associated with primary and acquired resistance; ORR at 16 weeks and total ORR; clinical benefit rate at 16 weeks; overall survival and 1- and 2-year OS rates; safety and adverse event profile; patient-reported quality of life by EORTC QLQ-C30 with longitudinal change analyses.
Burden on patient: Moderate. The regimen uses oral agents and standard-of-care style imaging every 8 weeks initially, which is somewhat more frequent than routine later-line practice but typical for phase 2 studies. Serial ctDNA draws at multiple timepoints add minimal procedural burden. A 20-patient subset undergoes additional PET/CT scans and a research biopsy at cycle 2 day 1, increasing burden for those participants due to extra visits, imaging radiation exposure, and an invasive procedure. Overall visit frequency, labs for safety, and potential dose modifications are consistent with TKI trials and should be manageable but require regular clinic engagement.
Inclusion Criteria:
* Age minimum of 18 years
* Histologically confirmed, inoperable or metastatic GIST with an exon 11 or exon 9 primary KIT mutation. Other primary KIT mutations (e.g., exon 13, exon 17) will be considered on a case-by-case basis after discussion with the Principal Investigator. Pathology reports including mutational analysis should be available for review by the Sponsor.
* Eastern Cooperative Oncology Group (ECOG) Performance Status of 0-2 (See Appendix A).
* Prior progression on or intolerance to imatinib. Imatinib intolerance is defined as discontinuation of imatinib due to an adverse event(s) related to treatment with imatinib that was not manageable with dose modifications.
* Documented disease progression on sunitinib of at least 25 mg daily as continuous treatment, or 37.5 mg daily with the 4 weeks on/2 weeks of schedule.
* At least one site of measurable disease on CT/MRI scan as defined by modified RECIST version 1.1 (mRECIST v1.1) criteria.
* Resolution of toxicities from prior therapy to ≤Grade 1 (or baseline), including clinically significant laboratory abnormalities, prior to the first dose of the study drug.
* Adequate organ function:
* Absolute Neutrophil Count (ANC) ≥ 1 x 109/L (unsupported for 7 days, or 14 days if pegfilgrastim was administered)
* Platelets ≥ 100 x 109/L (unsupported for 14 days)
* Hemoglobin ≥8 g/dL (unsupported for 14 days)
* ALT and AST ≤ 2.5 x institutional upper limit of normal (ULN) or ≤ 5.0 x institutional ULN in the presence of hepatic metastases.
* Serum bilirubin ≤ 1.5 x institutional ULN. NOTE: Patients with elevated bilirubin secondary to Gilbert's disease are eligible to participate in the study provided that direct bilirubin ≤1.5 x institutional ULN and indirect bilirubin ≤3 x institutional ULN
* Estimated glomerular filtration rate ≥45 mL/min/1.73 m2
* Ability and willingness to provide written, voluntary informed consent
* Ability to swallow pills
* For male subjects, unless having undergone permanent sterilization (includes bilateral orchidectomy), agreement to use effective barrier contraception (i.e., condoms) during the study treatment period and for 6 weeks after the last dose of study drug.
* For women of childbearing potential (WOCBP), confirmation of negative serum or urine pregnancy test prior to dosing with the study drug and agreement to the use of highly effective method of contraception with or without a barrier contraception method during the study treatment period and for 6 weeks after the last dose of the study drug. Female subjects who are using hormonal contraception must agree to remain on a stable regimen throughout the study unless a change is deemed medically necessary by the Investigator.
WOCBP are defined as defined as physiologically and anatomically capable of becoming pregnant, unless they meet one of the following conditions:
* Postmenopausal: 12 months of natural (spontaneous) amenorrhea without an alternative medical cause
* Prior hysterectomy
* Prior bilateral oophorectomy
* Prior bilateral salpingectomy
Highly effective methods of birth control includes:
* Combined (estrogen- and progesterone-containing) hormonal contraception associated with inhibition of ovulation, delivered orally, intravaginally, or transdermally
* Progestogen-only hormonal contraception associated with inhibition of ovulation, delivered orally, via injection, or implanted
* An intrauterine device (IUD)
* An intrauterine hormone-releasing system (IUS)
* Bilateral tubal occlusion
* Vasectomized partner - provided the partner is the sole sexual partner of the WOCBP study participant and that the vasectomized partner has received medical assessment of the surgical success
* Sexual abstinence, when consistent with the preferred and usual lifestyle of the subject, can be considered acceptable based on the evaluation of the Investigator, who should take into consideration the duration of the clinical study. Periodic abstinence (e.g., calendar, ovulation, symptothermal, post ovulation) and withdrawal are not considered acceptable methods of contraception.
* Life expectancy of \> 12 weeks
* For participants with evidence of chronic hepatitis B virus (HBV) infection, the HBV viral load must be undetectable on suppressive therapy, if indicated.
* Participants with a history of hepatitis C virus (HCV) infection must have been treated and cured. For participants with HCV infection who are currently on treatment, they are eligible if they have an undetectable HCV viral load.
* Patients with central nervous system disease are eligible for enrollment if they have received prior radiotherapy or surgery to sites of CNS metastatic disease and are without evidence of clinical or radiographic progression at the time of enrollment.
Exclusion Criteria:
* Prior exposure to bezuclastinib.
* Prior anticancer drug less than 5 half-lives of the parent drug and/or its active metabolite(s) or 14 days (whichever is shorter) prior to the first dose of the study drug.
* Received strong CYP3A4 inhibitor(s) or inducer(s) within 14 days or 5 drug half-lives before the first dose of the study drug, whichever is longer, or the need to continue treatment with strong CYP3A4 inhibitor(s) or inducer(s) during the study.
* GIST without primary activating mutations in KIT exons 11 or 9. Other primary KIT activating mutations will be considered on a case-by-case basis. Patients with GIST with other mutations (e.g., PDGFRA, SDHx, BRAF, or NF1) or unknown genotype are excluded.
* Known or suspected hypersensitivity to bezuclastinib or sunitinib and their components.
* Unacceptable toxicity with prior sunitinib at 25 mg daily.
* Clinically significant cardiac disease, defined by any of the following:
* Clinically significant cardiac arrhythmias and/or the need for antiarrhythmic therapy (excluding beta blockers or digoxin). Subjects with controlled atrial fibrillation are not excluded.
* Congenital long QT syndrome or use of concomitant medications known to prolong the QT interval as defined in Appendix D.
* A marked baseline prolongation of QT/QTc interval (e.g., repeated demonstration of a QTc interval \>470 milliseconds \[ms\] using Fridericia's QT correction formula).
* Clinically significant history of cardiac disease or congestive heart failure \>New York Heart Association Class II. Subjects must not have unstable angina (anginal symptoms at rest) or new-onset angina within 3 months or myocardial infarction within 6 months prior to enrollment.
* Arterial or venous thrombotic or embolic events such as cerebrovascular accident (including transient ischemic attacks), deep vein thrombosis, or pulmonary embolism within the 6 months before study drug initiation (except for adequately treated catheter-related venous thrombosis occurring more than 1 month before the first dose of study drug).
* Patients with a prior or concurrent malignancy whose natural history or treatment does not have the potential to interfere with the safety or efficacy assessment of the investigational regimen may be included after discussion with the Principal Investigator.
* Patients with severe and/or uncontrolled concurrent medical disease that in the opinion of the investigator could cause unacceptable safety risks or compromise compliance with the protocol.
* Patients known to be seropositive for human immunodeficiency virus (HIV) 1 or 2. HIV testing is not required as part of screening.
* Major surgery (including abdominal laparotomy) within 4 weeks prior to the first dose of study drug, or subjects who have not recovered adequately from prior surgery.
* Gastrointestinal abnormalities including, but not limited to, significant nausea and vomiting, malabsorption, external biliary shunt, or significant bowel resection that would preclude adequate absorption
* Any active bleeding, excluding hemorrhoidal or gum bleeding
* Women who are pregnant or nursing/breastfeeding.
* Patients with untreated central nervous system metastatic disease.
* Inability to comply with protocol required procedures
* Active, uncontrolled, systemic bacterial, fungal, or viral infections at Screening. NOTE: Oral antibiotics for a controlled infection (e.g., urinary tract infection) are permitted provided that the symptoms are mild and expected to resolve with appropriate treatment at the discretion of the investigator. Subjects on antimicrobial, antifungal, or antiviral prophylaxis are not specifically excluded if all other inclusion/exclusion criteria are met.
Miami, Florida, 33136, United States
[email protected] / 305-243-6111
Status: Recruiting
Boston, Massachusetts, 02215, United States
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Portland, Oregon, 97239, United States
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Philadelphia, Pennsylvania, 19111, United States
No email / No phone
Status: Recruiting